Objective To explore the brain injury mechanism and enrich the database of human finite element (FE) biomechanical model by developing the FE model of one-year-old toddler head. Methods Based on CT data from Chinese one-year-old toddler head with substantial and detailed information, the head model with detailed anatomical structure was constructed by using the medical software Mimics to get the head geometry data, as well as the reverse engineering software to divide NURBS surface and build the geometric model. Finally, the FE pre-processing software was used mesh the model. The FE model of one-year-old toddle head was validated by data from anatomic and cadaver experiments, and was used for preliminary analysis on damage mechanism of one-year-old toddler head. Results The FE model of Chinese one-year-old male toddler head was developed, which included and distinguished the gray matter and white matter of brain and cerebellum, hippocampus, fontanel, sagittal suture, coronal suture, brainstem and ventricles. The cadaver head static compression experiments and drop experiments were reconstructed by using this head model, and the results showed that the FE model of head had similar mechanical properties with the cadaver, which proved the validity of the FE model. Simulation results showed that skull stiffness and skull injury severity varied with different compression rates. Conclusions The FE model of one-year-old toddler head with detailed anatomical structures is of great biofidelity. The FE head model can be used to further investigate the detailed injury mechanism of deep brain tissues, especially for the closed craniocerebral injury, which provides an effective way and tool for the related research and clinical application.